Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs2377056 chr16:89616155 G/T 0.000168 283 25.63 26.37 17.13 KM Plot
KIRP rs2380127 chr17:80694140 G/A 1.63E-9 278 25.7 28.35 16.4 KM Plot
KIRP rs2394918 chr10:74882967 A/T 9.99E-15 288 26.37 22.8 5.6 KM Plot
KIRP rs2403645 chr11:20963571 C/T 1.29E-5 289 25.57 30.8 19.58 KM Plot
KIRP rs2405211 chr2:128479892 A/G 1.2E-6 288 26 22.57 8.47 KM Plot
KIRP rs2413663 chr22:42402399 T/A 0.000147 288 25.53 26.37 21.93 KM Plot
KIRP rs2414498 chr15:57592972 C/T 0 279 25.63 20.4 4.07 KM Plot
KIRP rs2414499 chr15:57595832 G/A 1.41E-6 288 25.7 23.63 7.28 KM Plot
KIRP rs2428188 chr6:110797214 C/G 4.3E-6 281 18.57 22.57 26.52 KM Plot
KIRP rs2428336 chr17:30290577 T/C 2.11E-11 277 26.57 24.48 10.88 KM Plot
KIRP rs2437149 chr1:231490105 C/T 0.000156 285 21.97 26.3 25.37 KM Plot
KIRP rs2465107 chr12:45327057 A/T 1.73E-5 286 20.33 26.83 24.3 KM Plot
KIRP rs2470236 chr17:30304940 G/C 9.37E-12 286 26.6 23.85 10.37 KM Plot
KIRP rs2474329 chr10:134161517 C/T 0.000185 287 26 25.8 5.67 KM Plot
KIRP rs2474342 chr10:134171239 A/T 0.00017 289 25.93 25.8 5.67 KM Plot